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HDF5  1.14.4.3
API Reference
 
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Examples by API

Navigate back: Main / Getting Started with HDF5


Examples Description

The C, FORTRAN and Java examples below point to the examples in the hdf5-examples github repository. Examples for older versions of HDF5 are handled by setting the appropriate USE_API_xxx definition. HDF5-1.6 examples are in a "16"-named subdirectory.

The Java examples are in the HDF5-1.14 source code, and the Java Object package examples are in the HDFView source. Please note that you must comment out the "package" statement at the top when downloading a Java Object example individually.

The MATLAB and Python examples were generously provided by a user and are not tested.

Languages are C, Fortran, Java (JHI5), Java Object Package, Python (High Level), and Python (Low Level APIs).

Datasets

Feature Languages HDF5 File Output DDL
Set Space Allocation Time for Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_alloc.h5 h5ex_d_alloc.tst h5ex_d_alloc.ddl
Read / Write Dataset using Fletcher32 Checksum Filter C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_checksum.h5 h5ex_d_checksum.tst h5ex_d_checksum.ddl
Read / Write Chunked Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_chunk.h5 h5ex_d_chunk.tst h5ex_d_chunk.ddl
Read / Write Compact Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_compact.h5 h5ex_d_compact.tst h5ex_d_compact.ddl
Read / Write to External Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_extern.h5 h5ex_d_extern.tst h5ex_d_extern.ddl
Read / Write Dataset w/ Fill Value C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_fillval.h5 h5ex_d_fillval.tst h5ex_d_fillval.ddl
Read / Write GZIP Compressed Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_gzip.h5 h5ex_d_gzip.tst h5ex_d_gzip.ddl
Read / Write Data by Hyperslabs C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_hyper.h5 h5ex_d_hyper.tst h5ex_d_hyper.ddl
Read / Write Dataset with n-bit Filter C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_nbit.h5 h5ex_d_nbit.tst h5ex_d_nbit.ddl
Read / Write Integer Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_rdwrc.h5 h5ex_d_rdwrc.tst h5ex_d_rdwr.ddl
Read / Write Dataset w/ Shuffle Filter and GZIP Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_shuffle.h5 h5ex_d_shuffle.tst h5ex_d_shuffle.ddl
Read / Write Dataset using Scale-Offset Filter (float) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_sofloat.h5 h5ex_d_sofloat.tst h5ex_d_sofloat.ddl
Read / Write Dataset using Scale-Offset Filter (integer) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_soint.h5 h5ex_d_soint.tst h5ex_d_soint.ddl
Read / Write Dataset using SZIP Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_szip.h5 h5ex_d_szip.tst h5ex_d_szip.ddl
Read / Write Dataset using Data Transform Expression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_transform.h5 h5ex_d_transform.tst h5ex_d_transform.ddl
Read / Write Unlimited Dimension Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_unlimadd.h5 h5ex_d_unlimadd.tst h5ex_d_unlimadd.ddl
Read / Write GZIP Compressed Unlimited Dimension Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_unlimgzip.h5 h5ex_d_unlimgzip.tst h5ex_d_unlimgzip.ddl
Read / Write / Edit Unlimited Dimension Dataset C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_unlimmod.h5 h5ex_d_unlimmod.tst h5ex_d_unlimmod.ddl

Groups

Feature Languages HDF5 File Output DDL
Create "compact-or-indexed" Format Groups C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_compact.h5 h5ex_g_.tst h5ex_g_compact1.ddl h5ex_g_compact2.ddl
Track links in a Group by Creation Order C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_corder.h5 h5ex_g_corder.tst h5ex_g_corder.ddl
Create / Open / Close a Group C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_create.h5 h5ex_g_create.tst h5ex_g_create.ddl
Create Intermediate Groups C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_intermediate.h5 h5ex_g_intermediate.tst h5ex_g_intermediate.ddl
Iterate over Groups w/ H5Literate C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_iterate.h5 h5ex_g_iterate.tst h5ex_g_iterate.ddl
Set Conditions to Convert between Compact and Dense Groups C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_phase.h5 h5ex_g_phase.tst h5ex_g_phase.ddl
Recursively Traverse a File with H5Literate C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_traverse.h5 h5ex_g_traverse.tst h5ex_g_traverse.ddl
Recursively Traverse a File with H5Ovisit / H5Lvisit C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_g_visit.h5 h5ex_g_visit.tst h5ex_g_visit.ddl

Datatypes

Feature Languages HDF5 File Output DDL
Read / Write Array (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_arrayatt.h5 h5ex_t_arrayatt.tst h5ex_t_arrayatt.ddl
Read / Write Array (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_array.h5 h5ex_t_array.tst h5ex_t_array.ddl
Read / Write Bitfield (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_bitatt.h5 h5ex_t_bitatt.tst h5ex_t_bitatt.ddl
Read / Write Bitfield (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_bit.h5 h5ex_t_bit.tst h5ex_t_bit.ddl
Read / Write Compound (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cmpdatt.h5 h5ex_t_cmpdatt.tst h5ex_t_cmpdatt.ddl
Read / Write Compound (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cmpd.h5 h5ex_t_cmpd.tst h5ex_t_cmpd.ddl
Commit Named Datatype and Read Back C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_commit.h5 h5ex_t_commit.tst h5ex_t_commit.ddl
Convert Between Datatypes in Memory C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_convert.h5 h5ex_t_convert.tst h5ex_t_convert.ddl
Read / Write Complex Compound (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cpxcmpdatt.h5 h5ex_t_cpxcmpdatt.tst h5ex_t_cpxcmpdatt.ddl
Read / Write Complex Compound (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cpxcmpd.h5 h5ex_t_cpxcmpd.tst h5ex_t_cpxcmpd.ddl
Read / Write Enumerated (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_enumatt.h5 h5ex_t_enumatt.tst h5ex_t_enumatt.ddl
Read / Write Enumerated (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_enum.h5 h5ex_t_enum.tst h5ex_t_enum.ddl
Read / Write Floating Point (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_floatatt.h5 h5ex_t_floatatt.tst h5ex_t_floatatt.ddl
Read / Write Floating Point (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_float.h5 h5ex_t_float.tst h5ex_t_float.ddl
Read / Write Integer Datatype (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_intatt.h5 h5ex_t_intatt.tst h5ex_t_intatt.ddl
Read / Write Integer Datatype (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_int.h5 h5ex_t_int.tst h5ex_t_int.ddl
Read / Write Object References (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_objrefatt.h5 h5ex_t_objrefatt.tst h5ex_t_objrefatt.ddl
Read / Write Object References (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_objref.h5 h5ex_t_objref.tst h5ex_t_objref.ddl
Read / Write Opaque (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_opaqueatt.h5 h5ex_t_opaqueatt.tst h5ex_t_opaqueatt.ddl
Read / Write Opaque (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_opaque.h5 h5ex_t_opaque.tst h5ex_t_opaque.ddl
Read / Write Region References (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_regrefatt.h5 h5ex_t_regrefatt.tst h5ex_t_regrefatt.ddl
Read / Write Region References (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_regref.h5 h5ex_t_regref.tst h5ex_t_regref.ddl
Read / Write String (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_stringatt.h5 h5ex_t_stringatt.tst h5ex_t_stringatt.ddl
Read / Write String (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_string.h5 h5ex_t_string.tst h5ex_t_string.ddl
Read / Write Variable Length (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlenatt.h5 h5ex_t_vlenatt.tst h5ex_t_vlenatt.ddl
Read / Write Variable Length (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlen.h5 h5ex_t_vlen.tst h5ex_t_vlen.ddl
Read / Write Variable Length String (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlstringatt.h5 h5ex_t_vlstringatt.tst h5ex_t_vlstringatt.ddl
Read / Write Variable Length String (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlstring.h5 h5ex_t_vlstring.tst h5ex_t_vlstring.ddl

Filters

Feature Languages HDF5 File Output DDL
Read / Write Dataset using Blosc Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_blosc.h5 h5ex_d_blosc.tst h5ex_d_blosc.ddl
Read / Write Dataset using Bit Shuffle Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_bshuf.h5 h5ex_d_bshuf.tst h5ex_d_bshuf.ddl
Read / Write Dataset using BZip2 Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_bzip2.h5 h5ex_d_bzip2.tst h5ex_d_bzip2.ddl
Read / Write Dataset using JPEG Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_jpeg.h5 h5ex_d_jpeg.tst h5ex_d_jpeg.ddl
Read / Write Dataset using LZ4 Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_lz4.h5 h5ex_d_lz4.tst h5ex_d_lz4.ddl
Read / Write Dataset using LZF Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_lzf.h5 h5ex_d_lzf.tst h5ex_d_lzf.ddl
Read / Write Dataset using MAFISC Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_mafisc.h5 h5ex_d_mafisc.tst h5ex_d_mafisc.ddl
Read / Write Dataset using ZFP Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_zfp.h5 h5ex_d_zfp.tst h5ex_d_zfp.ddl
Read / Write Dataset using ZStd Compression C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_d_zstd.h5 h5ex_d_zstd.tst h5ex_d_zstd.ddl

Java General

Feature Languages Output
Create/Read/Write an Attribute Java JavaObj HDF5AttributeCreate.txt
Create Datasets Java JavaObj HDF5DatasetCreate.txt
Read/Write Datasets Java JavaObj HDF5DatasetRead.txt
Create an Empty File Java JavaObj HDF5FileCreate.txt
Retrieve the File Structure Java JavaObj HDF5FileStructure.txt
Create Groups Java JavaObj HDF5GroupCreate.txt
Select a Subset of a Dataset Java JavaObj HDF5SubsetSelect.txt
Create Two Datasets Within Groups Java JavaObj HDF5GroupDatasetCreate.txt

Parallel

Feature Languages HDF5 File Output
Creating and Accessing a File C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Creating and Accessing a Dataset C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Writing and Reading Contiguous Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Writing and Reading Regularly Spaced Data Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Writing and Reading Pattern Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Writing and Reading Chunk Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Using the Subfiling VFD to Write a File Striped Across Multiple Subfiles C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Write to Datasets with Filters Applied C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst
Collectively Write Datasets with Filters and Not All Ranks have Data C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst

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