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  1. Taming Parallel I/O Complexity with Auto-Tuning

    faq hdf5 kbarticle parallel
    HDF Knowledge BaseJul 13, 2017
  2. Performance: Parallel I/O with Chunking Storage

    memory space: 2D: the first dimension 1, the second dimension DMAX Then, the performance may be much improved. faq hdf5 kbarticle parallel
    HDF Knowledge BaseJul 13, 2017
  3. Collective Metadata I/O

    The purpose of this page is to briefly describe the new HDF5 Collective Metadata I/O feature and provide a gateway to available documentation. The page includes the following sections: Collective Metadata I/O Overview Collective Metadata I/O User and Resource Documents HDF5 Library APIs Collective Metadata I/O
    HDF5Apr 06, 2018
  4. P4091-0713_2.pdf

    Taming Parallel I/O Complexity with AutoTuning Babak Behzad University of Illinois at UrbanaChampaign Huong Vu Thanh Luu University of Illinois … a large space of tunable pa rameters and to identify e↵ective settings at all layers of the parallel I/O stack. The parameter settings are applied trans
  5. H5Fill Behavior

    These tables summarize the library's fill value writing behavior for various property list settings and compare serial I/O vs. parallel I/O. Serial I/O … Incremental Same as Late Error Error Late Error Error Error Default setting. Parallel I/O For parallel I/O, the allocation time setting in the dataset creation property
    HDF5Mar 16, 2018
  6. H5P_GET_MPIO_NO_COLLECTIVE_CAUSE

    .rmnavbar Retrieves local and global causes that broke collective I/O on the last parallel I/O call Procedure: H5PGETMPIONOCOLLECTIVECAUSE( dxplid … collective I/O and perform independent I/O. Such causes can be different across the processes of a parallel application. This function allows the user to determine what
    HDF5Jan 04, 2018
  7. howison_hdf5_lustre_iasds2010.pdf

    : @hdfgroup.org ‡Cray Inc. 901 Fifth Avenue, Suite 1000 Seattle, WA 98164 Email: knaak@cray.com Abstract—HDF5 is a crossplatform parallel I/O library that is used by a wide … configurations and to validate our optimization strategy. We demonstrate that the combined optimizations improve HDF5 parallel I/O performance by up to 33 times
  8. howison_hdf5_lustre_iasds2010.pdf

    : @hdfgroup.org ‡Cray Inc. 901 Fifth Avenue, Suite 1000 Seattle, WA 98164 Email: knaak@cray.com Abstract—HDF5 is a crossplatform parallel I/O library that is used by a wide … configurations and to validate our optimization strategy. We demonstrate that the combined optimizations improve HDF5 parallel I/O performance by up to 33 times
  9. Introduction to Parallel HDF5

    parallel I/O interface had to be portable to different platforms. With these requirements of HDF5 our initial target was to support MPI programming … are not familiar with parallel programming, here is a tutorial that may be of interest: Tutorial on HDF5 I/O tuning at NERSC
    HDF5Mar 02, 2018
  10. RFC-Page_Buffering.pdf

    , but that is disabled in parallel HDF5 too. Parallel file systems on HPC machines, such as Lustre and GPFS, perform very poorly with small, fragmented I/O … . 3 Use cases It is well proven that parallel file systems on HPC systems perform badly with small fragmented I/O accesses. Considering HDF5’s metadata access
    HDF5 / … / RFC Page BufferingApr 06, 2018