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  1. Parallel HDF5

    / https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/browse/releasedocs directory of the source code. Tutorials There are two HDF5 tutorials that will help in learning Parallel HDF5: Learning the Basics New users to HDF5 should work through this tutorial first. It does not cover parallel programming but contains basic information needed in order to use
    HDF5Oct 24, 2018
  2. The parallel tests fail on a login node

    The parallel tests ("make check") should always be run on the compute node to avoid issues. parallel build
    HDF Knowledge BaseMay 15, 2019
  3. How to write and NOT to write compound datasets using F90 in Parallel HDF5

    Here are two examples of writing compound datatypes using F90 in Parallel HDF5: compoundpall.f90 … a compound dataset in parallel. hdf5 kbarticle parallel compounddatatypes howto
    HDF Knowledge BaseJul 10, 2019
  4. Introduction to Parallel HDF5

    If you are new to HDF5 please read the Learning the Basics topic first. Contents: Overview of Parallel HDF5 (PHDF5) Design Parallel Programming with HDF5arallel Programming with HDF5 Creating and Accessing a File with PHDF5 Creating and Accessing a Dataset with PHDF5 Writing and Reading Hyperslabs Overview of Parallel
    HDF5Mar 02, 2018
  5. Can you run Parallel HDF5 and the thread-safe feature together? What about Parallel HDF5 and C++?

    By default, you cannot build either Parallel HDF5 with C or Parallel HDF5 with the threadsafe feature. You will receive a configure error if you try either … .) If the build completes properly and the tests pass, then the installation should be okay. faq hdf5 kbarticle parallel
    HDF Knowledge BaseAug 24, 2017
  6. How to improve performance with Parallel HDF5

    Tuning parallel HDF5 for a specific application on a specific system requires playing with a lot of tunable parameters many of which are specific to certain … system's webpage on how to tune I/O parameters. For example, Hopper, a Cray XE6 supercomputer at NERSC, has a webpage specifically on how to tune parallel I/O
    HDF Knowledge BaseDec 14, 2017
  7. HDF-Java

    HDFJava wrappers are provided for users who wish to compile HDF5 and HDF4 applications in Java. They are the native interfaces for Java HDF (JHI) and Java HDF5 (JHI5) that consist of the Java classes and C interface libraries. These wrappers: use 64bit object identifiers. can be obtained by BUILDING HDF51.10
    HDF Support PortalMay 15, 2019
  8. Are serial HDF5 and Parallel HDF5 in the same source code?

    Yes, serial HDF5 and Parallel HDF5 (PHDF5) are part of the same HDF5 source code. Parallel HDF5 is a configure option that you can specify to build HDF5 with: ./configure enableparallel HDF5 "knows" certain parallel compilers and will automatically enable Parallel HDF5 if one of those compilers is specified in the CC
    HDF Knowledge BaseDec 14, 2017
  9. Collective Calling Requirements in Parallel HDF5 Applications

    Introduction This document addresses two topics of concern in a parallel computing environment: HDF5 functions that must be called collectively and when … to the same values for an object or link in all cases where the object or link is accessed in a parallel program. Function Available in releases since Dataset
    HDF5Oct 23, 2018
  10. How can Parallel HDF5 APIs be called (collectively, independently)?

    See Collective Calling Requirements in Parallel HDF5 Applications for information on how Parallel HDF5 APIs should be called. hdf5 kbarticle parallel api faq
    HDF Knowledge BaseDec 04, 2018