Configuring filters that process data during I/O operation (H5Z)
HDF5 supports a filter pipeline that provides the capability for standard and customized raw data processing during I/O operations. HDF5 is distributed with a small set of standard filters such as compression (gzip, SZIP, and a shuffling algorithm) and error checking (Fletcher32 checksum). For further flexibility, the library allows a user application to extend the pipeline through the creation and registration of customized filters.
The flexibility of the filter pipeline implementation enables the definition of additional filters by a user application. A filter
- is associated with a dataset when the dataset is created,
- can be used only with chunked data
(i.e., datasets stored in the
H5D_CHUNKEDstorage layout), and
- is applied independently to each chunk of the dataset.
The HDF5 library does not support filters for contiguous datasets because of the difficulty of implementing random access for partial I/O. Compact dataset filters are not supported because it would not produce significant results.
Filter identifiers for the filters distributed with the HDF5 Library are as follows:
|The gzip compression, or deflation, filter|
|The SZIP compression filter|
|The N-bit compression filter|
|The scale-offset compression filter|
|The shuffle algorithm filter|
|The Fletcher32 checksum, or error checking, filter|
Custom filters that have been registered with the library will have additional unique identifiers.
See HDF5 Dynamically Loaded Filters for more information on how an HDF5 application can apply a filter that is not registered with the HDF5 library.